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A41.9 ICD-10-CM Code: Sepsis, unspecified organism

A41.9 maps to CMS-HCC V28 2. A source-labeled RAF reference is available. Confirm the documented diagnosis and applicable coding requirements. MEAT criteria · RAF Calculator · free HCC coding tools

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Code lookupA41.9

FY 2026 Apr update / Certain infectious and parasitic diseases (A00-B99) / Other bacterial diseases (A30-A49)

A41.9

Billable / SpecificICD-10-CMOfficial ICD-10-CMCodebook guidance

Sepsis, unspecified organism

A serious bloodstream infection where harmful bacteria or other organisms have entered the blood and are causing a severe systemic response, but the specific organism causing the infection has not been identified. This is a life-threatening condition where the body's response to infection causes organ dysfunction.

Buddy the Bee presenting code insight

Buddy Insight

Sepsis, unspecified organism, is used when sepsis is clinically diagnosed and documented but the causative organism is unknown or not identified through cultures.

CMS-HCC V28

HCC 2

Coefficient HCC 2: 0.500 (Community Non-Dual Aged (CNA))

CMS-HCC V24

Historical

Historical

Not used for CY2026 payment

ACA/HHS

HCC 002

Code-level coefficient reference

ESRD/PACE

HCC 2

Code-level coefficient reference

RXHCC

N/A

—

Not mapped

Inclusion Terms

Official
  • Septicemia NOS

Excludes 2

Official
  • carrier or suspected carrier of infectious disease (Z22.-)Inherited from A00-B99, A41
  • infectious and parasitic diseases complicating pregnancy, childbirth and the puerperium (O98.-)Inherited from A00-B99, A41
  • infectious and parasitic diseases specific to the perinatal period (P35-P39)Inherited from A00-B99, A41
  • influenza and other acute respiratory infections (J00-J22)Inherited from A00-B99, A41
  • sepsis (due to) (in) actinomycotic (A42.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) anthrax (A22.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) candidal (B37.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) Erysipelothrix (A26.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) extraintestinal yersiniosis (A28.2)Inherited from A00-B99, A41
  • sepsis (due to) (in) gonococcal (A54.86)Inherited from A00-B99, A41
  • sepsis (due to) (in) herpesviral (B00.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) listerial (A32.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) melioidosis (A24.1)Inherited from A00-B99, A41
  • sepsis (due to) (in) meningococcal (A39.2-A39.4)Inherited from A00-B99, A41
  • sepsis (due to) (in) plague (A20.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) tularemia (A21.7)Inherited from A00-B99, A41
  • toxic shock syndrome (A48.3)Inherited from A00-B99, A41

Includes

Official
  • diseases generally recognized as communicable or transmissibleInherited from A00-B99

Excludes 1

Official
  • certain localized infections - see body system-related chaptersInherited from A00-B99, A41
  • bacteremia NOS (R78.81)Inherited from A00-B99, A41
  • neonatal (P36.-)Inherited from A00-B99, A41
  • puerperal sepsis (O85)Inherited from A00-B99, A41
  • streptococcal sepsis (A40.-)Inherited from A00-B99, A41

Code First

Official
  • , if applicable, postprocedural sepsis (T81.44-)Inherited from A41
  • sepsis due to central venous catheter (T80.211-)Inherited from A41
  • sepsis during labor (O75.3)Inherited from A41
  • sepsis following abortion, ectopic or molar pregnancy (O03.37, O03.87, O04.87, O07.37, O08.82)Inherited from A41
  • sepsis following immunization (T88.0-)Inherited from A41
  • sepsis following infusion, transfusion or therapeutic injection (T80.22-, T80.29-)Inherited from A41

Use Additional

Official
  • code to identify resistance to antimicrobial drugs (Z16.-)Inherited from A00-B99

Code Also

Official

No Code Also instructions are included in this display for A41.9. Check the code and parent instructions in the Code Book.

Buddy Documentation Tip

HCC Buddy guidance
Clinical documentation of sepsis with systemic inflammatory response criteria met
Blood cultures drawn (even if negative or pending)
Documentation of presumed source of infection
Organ dysfunction assessment (renal, hepatic, respiratory, coagulopathy, altered mental status)

MEAT Support

HCC Buddy guidance
Clinical documentation of sepsis with systemic inflammatory response criteria met
Blood cultures drawn (even if negative or pending)
Documentation of presumed source of infection
Organ dysfunction assessment (renal, hepatic, respiratory, coagulopathy, altered mental status)

Audit Caution

HCC Buddy guidance
A41.9 should not be the final code when culture results are available — always update to organism-specific codes
SIRS without infection (R65.10/R65.11) is NOT sepsis — do not code A41.9 for non-infectious SIRS
'Urosepsis' is not accepted as a sepsis diagnosis — query the provider for clarification and code the specific UTI and sepsis separately
Negative blood cultures do not preclude sepsis coding — clinical sepsis can be coded with culture-negative disease if the provider documents sepsis

Common Mistakes

HCC Buddy guidance
R65.20 (Severe sepsis without septic shock) — R65.20 is an additional code for severity, NOT a replacement for A41.9; use both when severe sepsis is present
R65.21 (Severe sepsis with septic shock) — Same as above — always pair with a sepsis code like A41.9
A40/A41.0-A41.89 — Any organism-specific sepsis code is preferred over A41.9 when the organism is known

Current with CMS: FY2026 ICD-10-CM Apr 1 update (effective Apr 1 – Sep 30, 2026) · CMS-HCC V28, 100% phased in for payment year 2026. FY2027 code set already staged for October 1, 2026. How HCC Buddy stays current →

Is A41.9 an HCC code?

Yes. A41.9 (Sepsis, unspecified organism) maps to HCC 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock under the CMS-HCC V28 risk adjustment model, with a source-labeled community non-dual aged reference coefficient of 0.500. Source-labeled code-level coefficients are references, not member totals. Actual contribution depends on complete member context, hierarchy and cleanup rules, interactions, and model year. HCC Buddy's RAF Calculator supports CMS-HCC V28 PY2026 and shows no score unless every required source and calculation check passes. It is billable for payment year 2026.

Coder answer: A41.9 is billable and maps to V28 HCC 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock. Open it in the Code Book for the tabular path, RAF, and MEAT checklist.

Code
A41.9
Description
Sepsis, unspecified organism
HCC (V28)
HCC 2 — Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock
RAF reference coefficient
0.500
Billable
Yes
Payment year
2026

HCC Category Mapping

V28HCC 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock
0.500
ESRDHCC 2, Septicemia/Sepsis/Systemic Inflammatory Response Syndrome/Shock
Not separately weighted

These are source-labeled model coefficients, not member totals. A category may still be removed by hierarchy or model cleanup rules. Weights are not directly comparable across models: CMS-HCC V28 and V24 use Community, Non-Dual, Aged; ESRD uses the dialysis continuing-enrollee model; RxHCC is the Part D continuing-enrollee, non-low-income, aged weight (a larger scale than CMS-HCC). ACA/HHS has no single weight — it varies by metal level. Actual per-patient RAF contribution depends on member context, hierarchy and cleanup rules, interactions, and the model year used by the payer. V28 is the CMS-HCC model phased in over payment years 2024–2026; V24 remains available for historical review.

Work A41.9 in the Code Book — tabular path, V28 RAF reference, and MEAT checklist →

MEAT review for A41.9

For A41.9, confirm that the documentation supports the diagnosis and meets the applicable coding, encounter, program and payer requirements. MEAT (Monitor, Evaluate, Assess, or Treat) is a review mnemonic, not a universal CMS coding rule.

  • MMonitor: signs, symptoms, disease progression, or lab trending documented in the note
  • EEvaluate: test results, medication response, or physical findings reviewed by the provider
  • AAssess: explicit mention in the assessment or plan with acknowledgment of status
  • TTreat: medication, referral, procedure, therapy, or counseling tied to the diagnosis

Coder workflow notes

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What This Code Means

A41.9 is the ICD-10-CM diagnosis code for sepsis, unspecified organism. A serious bloodstream infection where harmful bacteria or other organisms have entered the blood and are causing a severe systemic response, but the specific organism causing the infection has not been identified. This is a life-threatening condition where the body's response to infection causes organ dysfunction. A41.9 sits in the ICD-10-CM chapter for certain infectious and parasitic diseases (a00-b99), within the section covering other bacterial diseases (a30-a49).

Under the CMS-HCC V28 risk adjustment model, A41.9 maps to Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock (HCC 2) with a source-labeled community, non-dual, aged reference coefficient of 0.500. For CY2026 non-PACE Medicare Advantage, CMS uses 100% of the 2024 CMS-HCC model (V28). PACE uses a separate model blend. Source-labeled code-level coefficients are references, not member totals. Actual contribution depends on complete member context, hierarchy and cleanup rules, interactions, and model year. HCC Buddy's RAF Calculator supports CMS-HCC V28 PY2026 and shows no score unless every required source and calculation check passes.

Only use A41.9 when the organism is truly unknown or unspecified; if any organism is identified, use the more specific A41.x code (such as A41.0 for Staphylococcus aureus or A41.1 for Streptococcus pneumoniae). For A41.9, confirm that the documentation supports the diagnosis and meets the applicable coding, encounter, program and payer requirements. MEAT (Monitor, Evaluate, Assess, or Treat) is a review mnemonic, not a universal CMS coding rule. When documentation is ambiguous, coders should issue a provider query rather than assume the highest-specificity variant.

HCC Buddy maintains structured V28 and V24 mapping, source-labeled coefficient references, and MEAT documentation criteria for A41.9 sourced directly from the CMS-HCC risk adjustment model files and the CMS ICD-10-CM code set.

Coding Tips

  • •Only use A41.9 when the organism is truly unknown or unspecified; if any organism is identified, use the more specific A41.x code (such as A41.0 for Staphylococcus aureus or A41.1 for Streptococcus pneumoniae)
  • •Sepsis coding requires documentation of the systemic inflammatory response; ensure the clinical record supports sepsis diagnosis and consider querying the provider if only bacteremia or infection is documented without sepsis criteria

Clinical Significance

Sepsis, unspecified organism, is used when sepsis is clinically diagnosed and documented but the causative organism is unknown or not identified through cultures. While it captures the sepsis diagnosis for risk adjustment, it represents the lowest specificity level and should be updated when organism identification becomes available.

Documentation Requirements

  • ✓Clinical documentation of sepsis with systemic inflammatory response criteria met
  • ✓Blood cultures drawn (even if negative or pending)
  • ✓Documentation of presumed source of infection
  • ✓Organ dysfunction assessment (renal, hepatic, respiratory, coagulopathy, altered mental status)
  • ✓Antibiotic therapy initiated (reflects clinical judgment of sepsis even without positive cultures)

Commonly Confused Codes

  • •R65.20 (Severe sepsis without septic shock): R65.20 is an additional code for severity, NOT a replacement for A41.9; use both when severe sepsis is present
  • •R65.21 (Severe sepsis with septic shock): Same as above: always pair with a sepsis code like A41.9
  • •A40/A41.0-A41.89: Any organism-specific sepsis code is preferred over A41.9 when the organism is known

Child Codes

Code Hierarchy

└A41Other sepsis└A41.9Sepsis, unspecified organism
└A41.9Sepsis, unspecified organism

Also searched as

  • A41 9
  • A419

For A41.9, confirm that the documentation supports the diagnosis and meets the applicable coding, encounter, program and payer requirements. MEAT (Monitor, Evaluate, Assess, or Treat) is a review mnemonic, not a universal CMS coding rule.

A41.9 maps to CMS-HCC V28 category 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock. See the ICD-10 to HCC mapping hub for how the V28 crosswalk works. The mapping identifies a payment HCC category for A41.9. Review its source-labeled HCC coefficient above, check the RAF Calculator with complete member context for CMS-HCC V28 PY2026, and confirm the documentation the chart needs before the code is submitted. HCC Buddy shows no RAF score unless every required source and calculation check passes.

More on A41.9

Referenced in blog posts

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