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C49.A2 ICD-10-CM Code: Gastrointestinal stromal tumor of stomach

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FY 2026 Apr update / Neoplasms (C00-D49) / Malignant neoplasms of mesothelial and soft tissue (C45-C49)

C49.A2

Billable / SpecificICD-10-CMOfficial ICD-10-CMCodebook guidance

Gastrointestinal stromal tumor of stomach

A gastrointestinal stromal tumor (GIST) is a rare type of cancer that develops in the stomach from specialized nerve cells. These tumors can vary in size and aggressiveness, and may require surgery or targeted medication to treat.

Buddy the Bee presenting code insight

Buddy Insight

Gastrointestinal stromal tumor of the stomach is the most common GIST location, accounting for approximately 60-70% of all GISTs.

CMS-HCC V28

HCC 23

RAF 0.186

CMS-HCC V24

HCC 10

RAF 0.675

ACA/HHS

HCC 10

Varies by metal level

ESRD/PACE

HCC 10

RAF 0.111

RXHCC

HCC 20

RAF 0.491

Code Book Path

Official
C49Malignant neoplasm of other connective and soft tissue
C49.AGastrointestinal stromal tumor
C49.A2Gastrointestinal stromal tumor of stomach

Inclusion Terms

Official

ICD-10-CM does not list inclusion terms for C49.A2 in this effective period.

Excludes 2

Official

ICD-10-CM does not list Excludes 2 notes for C49.A2 in this effective period.

Related Child Codes

Official
C49.A0Gastrointestinal stromal tumor, unspecified site
C49.A1Gastrointestinal stromal tumor of esophagus
C49.A3Gastrointestinal stromal tumor of small intestine
C49.A4Gastrointestinal stromal tumor of large intestine
C49.A5Gastrointestinal stromal tumor of rectum

Includes

Official

ICD-10-CM does not list Includes notes for C49.A2 in this effective period.

Excludes 1

Official

ICD-10-CM does not list Excludes 1 notes for C49.A2 in this effective period.

Code First

Official

ICD-10-CM does not list Code First sequencing instructions for C49.A2 in this effective period.

Use Additional

Official

ICD-10-CM does not list Use Additional Code instructions for C49.A2 in this effective period.

Code Also

Official

ICD-10-CM does not list Code Also instructions for C49.A2 in this effective period.

Buddy Documentation Tip

HCC Buddy guidance
Pathology confirming GIST of gastric origin with immunohistochemistry (KIT/CD117, DOG1)
Specific gastric location (fundus, body, antrum, cardia)
Tumor size (critical for risk: <2cm, 2-5cm, 5-10cm, >10cm)
Mitotic rate per 50 high-power fields

MEAT Support

HCC Buddy guidance
Pathology confirming GIST of gastric origin with immunohistochemistry (KIT/CD117, DOG1)
Specific gastric location (fundus, body, antrum, cardia)
Tumor size (critical for risk: <2cm, 2-5cm, 5-10cm, >10cm)
Mitotic rate per 50 high-power fields

Audit Caution

HCC Buddy guidance
Confusing gastric GIST with gastric adenocarcinoma — GIST is a mesenchymal tumor, adenocarcinoma is epithelial
Using the generic stomach cancer code (C16) instead of the GIST-specific code (C49.A2)
Coding a small incidentally discovered GIST (<2cm) as malignant without pathology supporting malignant behavior
Not distinguishing between malignant GIST and uncertain behavior GIST (which would use D48 codes)

Common Mistakes

HCC Buddy guidance
C16._ (Malignant neoplasm of stomach) — gastric adenocarcinoma, not GIST
C49.A0 (GIST, unspecified site) — use C49.A2 when stomach is documented
C49.A3 (GIST of small intestine) — different site with different prognosis
D21.4 (Benign neoplasm of connective tissue of abdomen) — benign tumor, not malignant GIST

Current with CMS: FY2026 ICD-10-CM Apr 1 update (effective Apr 1 – Sep 30, 2026) · CMS-HCC V28, 100% phased in for payment year 2026. FY2027 code set already staged for October 1, 2026. How HCC Buddy stays current →

Is C49.A2 an HCC code?

Yes. C49.A2 (Gastrointestinal stromal tumor of stomach) maps to Prostate, Breast, and Other Cancers and Tumors under the CMS-HCC V28 risk adjustment model (and Lymphoma and Other Cancers under V24), with a community non-dual aged RAF of 0.186. It is billable for payment year 2026.

Coder answer: C49.A2 is billable and maps to V28 HCC 23, Prostate, Breast, and Other Cancers and Tumors. Open it in the Code Book for the tabular path, RAF, and MEAT checklist.

Code
C49.A2
Description
Gastrointestinal stromal tumor of stomach
HCC (V28)
HCC 23 — Prostate, Breast, and Other Cancers and Tumors
RAF
0.186
Billable
Yes
Payment year
2026

HCC Category Mapping

V28HCC 23, Prostate, Breast, and Other Cancers and Tumors
0.186
V24HCC 10, Lymphoma and Other Cancers
0.675
ESRDHCC 10, Lymphoma and Other Cancers
0.111
RxHCCHCC 20, Cancer, Liver and Intrahepatic Bile Duct
0.491

Each model's RAF is its CMS base weight for that model's standard population, so weights are not directly comparable across models: CMS-HCC V28 and V24 use Community, Non-Dual, Aged; ESRD uses the dialysis continuing-enrollee model; RxHCC is the Part D continuing-enrollee, non-low-income, aged weight (a larger scale than CMS-HCC). ACA/HHS has no single weight — it varies by metal level. Actual per-patient RAF contribution depends on member segment, interactions, and the model year used by the payer. V28 is the CMS-HCC model phased in over payment years 2024–2026; V24 remains in use during the transition and for historical data.

Work C49.A2 in the Code Book — tabular path, V28 RAF, and MEAT checklist →

MEAT Criteria for C49.A2

For C49.A2 to count as a valid HCC diagnosis in a given encounter, the provider's documentation must show MEAT: Monitor, Evaluate, Assess, or Treat. A diagnosis from a prior year does not carry forward automatically, it has to be re-documented and supported each calendar year.

  • MMonitor: signs, symptoms, disease progression, or lab trending documented in the note
  • EEvaluate: test results, medication response, or physical findings reviewed by the provider
  • AAssess: explicit mention in the assessment or plan with acknowledgment of status
  • TTreat: medication, referral, procedure, therapy, or counseling tied to the diagnosis

Only one of M/E/A/T is required to support the code, but the documentation must be specific enough to show that the provider actually addressed C49.A2 during that encounter, not just copy-forwarded from a problem list.

Coder workflow notes

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What This Code Means

C49.A2 is the ICD-10-CM diagnosis code for gastrointestinal stromal tumor of stomach. A gastrointestinal stromal tumor (GIST) is a rare type of cancer that develops in the stomach from specialized nerve cells. These tumors can vary in size and aggressiveness, and may require surgery or targeted medication to treat. C49.A2 sits in the ICD-10-CM chapter for neoplasms (c00-d49), within the section covering malignant neoplasms of mesothelial and soft tissue (c45-c49).

Under the CMS-HCC V28 risk adjustment model, C49.A2 maps to Prostate, Breast, and Other Cancers and Tumors (HCC 23) with a community, non-dual, aged base RAF weight of 0.186. Under the older CMS-HCC V24 model, C49.A2 maps to Lymphoma and Other Cancers (HCC 10) with a community, non-dual, aged base RAF weight of 0.675. V28 is the CMS-HCC risk adjustment model that reached 100% phase-in for payment year 2026, replacing V24 which was used during the PY2024–PY2025 transition.

Verify the tumor location is specifically the stomach; GISTs can occur in other parts of the digestive tract and require different codes (C49.A1 for esophagus, C49.A3 for small intestine, etc.). Because C49.A2 maps to a payment HCC, the provider's documentation must satisfy MEAT criteria (Monitor, Evaluate, Assess, or Treat) for the encounter to count toward the patient's Medicare Advantage risk adjustment score. When documentation is ambiguous, coders should issue a provider query rather than assume the highest-specificity variant.

HCC Buddy maintains structured V28 and V24 mapping, RAF weights, and MEAT documentation criteria for C49.A2 sourced directly from the CMS-HCC risk adjustment model files and the CMS ICD-10-CM code set.

Coding Tips

  • Verify the tumor location is specifically the stomach; GISTs can occur in other parts of the digestive tract and require different codes (C49.A1 for esophagus, C49.A3 for small intestine, etc.)
  • Ensure documentation includes whether the tumor is benign, uncertain behavior, or malignant, as this affects code selection and staging requirements

Clinical Significance

Gastrointestinal stromal tumor of the stomach is the most common GIST location, accounting for approximately 60-70% of all GISTs. Gastric GISTs generally have a better prognosis than small intestinal GISTs of the same size and mitotic rate, making accurate site-specific coding important for prognostic stratification.

Documentation Requirements

  • Pathology confirming GIST of gastric origin with immunohistochemistry (KIT/CD117, DOG1)
  • Specific gastric location (fundus, body, antrum, cardia)
  • Tumor size (critical for risk: <2cm, 2-5cm, 5-10cm, >10cm)
  • Mitotic rate per 50 high-power fields
  • Treatment plan (surgical resection, imatinib therapy, observation for small tumors)

Commonly Confused Codes

  • C16._ (Malignant neoplasm of stomach): gastric adenocarcinoma, not GIST
  • C49.A0 (GIST, unspecified site): use C49.A2 when stomach is documented
  • C49.A3 (GIST of small intestine): different site with different prognosis
  • D21.4 (Benign neoplasm of connective tissue of abdomen): benign tumor, not malignant GIST

Child Codes

Code Hierarchy

C49.A2 code history

Code setChange
FY2017 (effective Oct 1, 2016)Added to the code set

Source: official CMS ICD-10-CM order and addenda files, FY2016 through FY2027.

Because C49.A2 maps to a payment HCC, the documentation must also satisfy MEAT criteria (Monitor, Evaluate, Assess, or Treat) for the encounter to count toward the patient's risk adjustment score.

C49.A2 maps to CMS-HCC V28 category 23, Prostate, Breast, and Other Cancers and Tumors. See the ICD-10 to HCC mapping hub for how the V28 crosswalk works. Because C49.A2 carries a payment HCC, you can see what it adds to a RAF score and check the documentation the chart needs before it is submitted.

Work C49.A2 in HCC Buddy

Open C49.A2 in the Code Book for the full Index-to-Tabular path, MEAT checklist, and V28 HCC mapping, or in the Encoder to code from a keyword search. Pro includes 7 days to try everything, no card required.