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A41.01 ICD-10-CM Code: Sepsis due to Methicillin susceptible Staphylococcus aureus

A41.01 maps to CMS-HCC V28 2. A source-labeled RAF reference is available. Confirm the documented diagnosis and applicable coding requirements. MEAT criteria · RAF Calculator · HCC Buddy coding tools

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Code lookupA41.01

FY 2026 Apr update / Certain infectious and parasitic diseases (A00-B99) / Other bacterial diseases (A30-A49)

A41.01

Billable / SpecificICD-10-CMOfficial ICD-10-CMCodebook guidance

Sepsis due to Methicillin susceptible Staphylococcus aureus

This is a serious bloodstream infection caused by a common bacteria called Staphylococcus aureus that responds to the antibiotic methicillin. The infection has spread throughout the body and triggered a severe inflammatory response that can affect multiple organs.

Buddy the Bee presenting code insight

Buddy Insight

Sepsis due to methicillin-susceptible Staphylococcus aureus (MSSA) is a common and serious bloodstream infection with significant morbidity and mortality.

CMS-HCC V28

HCC 2

Coefficient HCC 2: 0.500 (Community Non-Dual Aged (CNA))

CMS-HCC V24

Historical

Historical

Not used for CY2026 payment

ACA/HHS

HCC 002

Code-level coefficient reference

ESRD/PACE

HCC 2

Code-level coefficient reference

RXHCC

N/A

Not mapped

Inclusion Terms

Official
  • MSSA sepsis
  • Staphylococcus aureus sepsis NOS

Excludes 2

Official
  • carrier or suspected carrier of infectious disease (Z22.-)Inherited from A00-B99, A41
  • infectious and parasitic diseases complicating pregnancy, childbirth and the puerperium (O98.-)Inherited from A00-B99, A41
  • infectious and parasitic diseases specific to the perinatal period (P35-P39)Inherited from A00-B99, A41
  • influenza and other acute respiratory infections (J00-J22)Inherited from A00-B99, A41
  • sepsis (due to) (in) actinomycotic (A42.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) anthrax (A22.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) candidal (B37.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) Erysipelothrix (A26.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) extraintestinal yersiniosis (A28.2)Inherited from A00-B99, A41
  • sepsis (due to) (in) gonococcal (A54.86)Inherited from A00-B99, A41
  • sepsis (due to) (in) herpesviral (B00.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) listerial (A32.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) melioidosis (A24.1)Inherited from A00-B99, A41
  • sepsis (due to) (in) meningococcal (A39.2-A39.4)Inherited from A00-B99, A41
  • sepsis (due to) (in) plague (A20.7)Inherited from A00-B99, A41
  • sepsis (due to) (in) tularemia (A21.7)Inherited from A00-B99, A41
  • toxic shock syndrome (A48.3)Inherited from A00-B99, A41

Includes

Official
  • diseases generally recognized as communicable or transmissibleInherited from A00-B99

Excludes 1

Official
  • certain localized infections - see body system-related chaptersInherited from A00-B99, A41
  • bacteremia NOS (R78.81)Inherited from A00-B99, A41
  • neonatal (P36.-)Inherited from A00-B99, A41
  • puerperal sepsis (O85)Inherited from A00-B99, A41
  • streptococcal sepsis (A40.-)Inherited from A00-B99, A41

Code First

Official
  • , if applicable, postprocedural sepsis (T81.44-)Inherited from A41
  • sepsis due to central venous catheter (T80.211-)Inherited from A41
  • sepsis during labor (O75.3)Inherited from A41
  • sepsis following abortion, ectopic or molar pregnancy (O03.37, O03.87, O04.87, O07.37, O08.82)Inherited from A41
  • sepsis following immunization (T88.0-)Inherited from A41
  • sepsis following infusion, transfusion or therapeutic injection (T80.22-, T80.29-)Inherited from A41

Use Additional

Official
  • code to identify resistance to antimicrobial drugs (Z16.-)Inherited from A00-B99

Code Also

Official

No Code Also instructions are included in this display for A41.01. Check the code and parent instructions in the Code Book.

Buddy Documentation Tip

HCC Buddy guidance
Blood cultures positive for Staphylococcus aureus with susceptibility testing showing methicillin susceptibility
Documentation explicitly stating MSSA (not just S. aureus without susceptibility information)
Sepsis criteria met with identified source when possible
Echocardiogram results to evaluate for endocarditis (recommended for all S. aureus bacteremia)

MEAT Support

HCC Buddy guidance
Blood cultures positive for Staphylococcus aureus with susceptibility testing showing methicillin susceptibility
Documentation explicitly stating MSSA (not just S. aureus without susceptibility information)
Sepsis criteria met with identified source when possible
Echocardiogram results to evaluate for endocarditis (recommended for all S. aureus bacteremia)

Audit Caution

HCC Buddy guidance
Do not code A41.01 if susceptibility testing has not been performed or results are pending — use A41.2 until MSSA is confirmed
All S. aureus bacteremia requires echocardiogram — if endocarditis is found, code I33.0 (Acute endocarditis) separately
S. aureus bacteremia frequently requires 4-6 weeks of IV antibiotics — the duration of treatment should be reflected in documentation
Always code severe sepsis (R65.20) or septic shock (R65.21) when documented

Common Mistakes

HCC Buddy guidance
A41.02 (MRSA sepsis) — MRSA is methicillin-resistant; the distinction determines antibiotic therapy and carries epidemiologic significance
A41.2 (Sepsis due to unspecified staphylococcus) — Use A41.01 when MSSA is specifically identified, not the unspecified staph code
A41.1 (Sepsis due to other specified staphylococcus) — A41.1 is for coagulase-negative staph species; A41.01 is for S. aureus specifically

Current with CMS: FY2026 ICD-10-CM Apr 1 update (effective Apr 1 – Sep 30, 2026) · CMS-HCC V28, 100% phased in for payment year 2026. FY2027 code set already staged for October 1, 2026. How HCC Buddy stays current →

Is A41.01 an HCC code?

Yes. A41.01 (Sepsis due to Methicillin susceptible Staphylococcus aureus) maps to HCC 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock under the CMS-HCC V28 risk adjustment model, with a source-labeled community non-dual aged reference coefficient of 0.500. Source-labeled code-level coefficients are references, not member totals. Actual contribution depends on complete member context, hierarchy and cleanup rules, interactions, and model year. HCC Buddy's RAF Calculator supports CMS-HCC V28 PY2026 and shows no score unless every required source and calculation check passes. It is billable for payment year 2026.

Coder answer: A41.01 is billable and maps to V28 HCC 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock. Open it in the Code Book for the tabular path, RAF, and MEAT checklist.

Code
A41.01
Description
Sepsis due to Methicillin susceptible Staphylococcus aureus
HCC (V28)
HCC 2 — Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock
RAF reference coefficient
0.500
Billable
Yes
Payment year
2026

HCC Category Mapping

V28HCC 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock
0.500
ESRDHCC 2, Septicemia/Sepsis/Systemic Inflammatory Response Syndrome/Shock
Not separately weighted

These are source-labeled model coefficients, not member totals. A category may still be removed by hierarchy or model cleanup rules. Weights are not directly comparable across models: CMS-HCC V28 and V24 use Community, Non-Dual, Aged; ESRD uses the dialysis continuing-enrollee model; RxHCC is the Part D continuing-enrollee, non-low-income, aged weight (a larger scale than CMS-HCC). ACA/HHS has no single weight — it varies by metal level. Actual per-patient RAF contribution depends on member context, hierarchy and cleanup rules, interactions, and the model year used by the payer. V28 is the CMS-HCC model phased in over payment years 2024–2026; V24 remains available for historical review.

Work A41.01 in the Code Book — tabular path, V28 RAF reference, and MEAT checklist →

MEAT review for A41.01

For A41.01, confirm that the documentation supports the diagnosis and meets the applicable coding, encounter, program and payer requirements. MEAT (Monitor, Evaluate, Assess, or Treat) is a review mnemonic, not a universal CMS coding rule.

  • MMonitor: signs, symptoms, disease progression, or lab trending documented in the note
  • EEvaluate: test results, medication response, or physical findings reviewed by the provider
  • AAssess: explicit mention in the assessment or plan with acknowledgment of status
  • TTreat: medication, referral, procedure, therapy, or counseling tied to the diagnosis

Coder workflow notes

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What This Code Means

A41.01 is the ICD-10-CM diagnosis code for sepsis due to methicillin susceptible staphylococcus aureus. This is a serious bloodstream infection caused by a common bacteria called Staphylococcus aureus that responds to the antibiotic methicillin. The infection has spread throughout the body and triggered a severe inflammatory response that can affect multiple organs. A41.01 sits in the ICD-10-CM chapter for certain infectious and parasitic diseases (a00-b99), within the section covering other bacterial diseases (a30-a49).

Under the CMS-HCC V28 risk adjustment model, A41.01 maps to Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock (HCC 2) with a source-labeled community, non-dual, aged reference coefficient of 0.500. No V24 mapping is shown for A41.01; use the applicable model and payment year when reviewing the V28 mapping. For CY2026 non-PACE Medicare Advantage, CMS uses 100% of the 2024 CMS-HCC model (V28). PACE uses a separate model blend. Source-labeled code-level coefficients are references, not member totals. Actual contribution depends on complete member context, hierarchy and cleanup rules, interactions, and model year. HCC Buddy's RAF Calculator supports CMS-HCC V28 PY2026 and shows no score unless every required source and calculation check passes.

Ensure documentation specifies that the S. aureus is methicillin-susceptible (not resistant) to assign this code correctly, as methicillin-resistant strains use different codes (A41.02). For A41.01, confirm that the documentation supports the diagnosis and meets the applicable coding, encounter, program and payer requirements. MEAT (Monitor, Evaluate, Assess, or Treat) is a review mnemonic, not a universal CMS coding rule. When documentation is ambiguous, coders should issue a provider query rather than assume the highest-specificity variant.

HCC Buddy maintains structured V28 and V24 mapping, source-labeled coefficient references, and MEAT documentation criteria for A41.01 sourced directly from the CMS-HCC risk adjustment model files and the CMS ICD-10-CM code set.

Coding Tips

  • Ensure documentation specifies that the S. aureus is methicillin-susceptible (not resistant) to assign this code correctly, as methicillin-resistant strains use different codes (A41.02)
  • This code requires a secondary code to identify the source/site of infection (e.g., skin, urinary tract, wound) when documented, and may require additional codes for organ dysfunction if septic shock is present

Clinical Significance

Sepsis due to methicillin-susceptible Staphylococcus aureus (MSSA) is a common and serious bloodstream infection with significant morbidity and mortality. MSSA sepsis carries a risk of metastatic complications including endocarditis, osteomyelitis, and deep-seated abscesses. The methicillin susceptibility designation is clinically important as it determines antibiotic therapy (nafcillin/oxacillin preferred over vancomycin).

Documentation Requirements

  • Blood cultures positive for Staphylococcus aureus with susceptibility testing showing methicillin susceptibility
  • Documentation explicitly stating MSSA (not just S. aureus without susceptibility information)
  • Sepsis criteria met with identified source when possible
  • Echocardiogram results to evaluate for endocarditis (recommended for all S. aureus bacteremia)
  • Follow-up blood cultures to document clearance (standard of care for S. aureus bacteremia)

Commonly Confused Codes

  • A41.02 (MRSA sepsis): MRSA is methicillin-resistant; the distinction determines antibiotic therapy and carries epidemiologic significance
  • A41.2 (Sepsis due to unspecified staphylococcus): Use A41.01 when MSSA is specifically identified, not the unspecified staph code
  • A41.1 (Sepsis due to other specified staphylococcus): A41.1 is for coagulase-negative staph species; A41.01 is for S. aureus specifically

Child Codes

Code Hierarchy

Also searched as

  • A41 01
  • A4101

For A41.01, confirm that the documentation supports the diagnosis and meets the applicable coding, encounter, program and payer requirements. MEAT (Monitor, Evaluate, Assess, or Treat) is a review mnemonic, not a universal CMS coding rule.

A41.01 maps to CMS-HCC V28 category 2, Septicemia, Sepsis, Systemic Inflammatory Response Syndrome/Shock. See the ICD-10 to HCC mapping hub for how the V28 crosswalk works. The mapping identifies a payment HCC category for A41.01. Review its source-labeled HCC coefficient above, check the RAF Calculator with complete member context for CMS-HCC V28 PY2026, and confirm the documentation the chart needs before the code is submitted. HCC Buddy shows no RAF score unless every required source and calculation check passes.

Work A41.01 in HCC Buddy

Open A41.01 in the Code Book for the full Index-to-Tabular path, MEAT checklist, and V28 HCC mapping, or in the Encoder to code from a keyword search. Pro includes 7 days to try everything, no card required.